Information for 21-TGTCGCTAAG (Motif 22)

A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G
Reverse Opposite:
A G T C C G A T A C G T C T G A A C T G A G T C A T C G C G T A A G T C G T C A
p-value:1e-6
log p-value:-1.436e+01
Information Content per bp:1.799
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif39.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets42.4 +/- 21.3bp
Average Position of motif in Background43.1 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TGTCGCTAAG-
CTGTTGCTAGGS
 A C G T A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--TGTCGCTAAG---
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G A C G T A C G T A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------TGTCGCTAAG-------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TGTCGCTAAG---
NCCGTTGCTANGNGN
 A C G T A C G T A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G A C G T A C G T A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TGTCGCTAAG-----
-GTTGCCATGGNAAC
 A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

PB0158.1_Rfx3_2/Jaspar

Match Rank:6
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------TGTCGCTAAG-------
NNTNGNNGTAACCAAGNNNNAGN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T A G C G C A T A G C T A G C T A C T G A G C T A C T G C A T G G A C T G T C A G C T A T A G C A G T C C G T A C G T A T A C G A T C G T A C G C G A T T A G C T G C A C T A G A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TGTCGCTAAG----
NGTTGCCATGGCAA
 A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G A C G T A C G T A C G T A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TGTCGCTAAG-----
KGTTGCTAGGMAACA
 A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C A T G A C T G A G C T C G A T C T A G A G T C A G C T C T G A C T A G A C T G T G C A C T G A T C G A A G T C G T C A

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGTCGCTAAG---
NTNNCGTATCCAAGTNN
 A C G T A C G T A C G T A C G T A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G A C G T A C G T A C G T
C G T A C G A T G C A T A T G C A T G C C T A G G A C T G T C A C G A T A G T C A G T C C T G A G T C A T A C G A G C T T G C A T A C G

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-TGTCGCTAAG-
AGGTCTCTAACC
 A C G T A C G T A C T G C G A T A T G C T C A G A G T C G A C T G T C A C G T A A C T G A C G T
C T G A T C A G A C T G C A G T A G T C G A C T A G T C A C G T C G T A G C T A A T G C G A T C