Information for 3-GTGGCTGCCGTGGACA (Motif 5)

A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A
Reverse Opposite:
A C G T A C T G A G C T A G T C A G T C C G T A T A G C A C T G A T C G A G T C C G T A A C T G A G T C G T A C G T C A A G T C
p-value:1e-10
log p-value:-2.477e+01
Information Content per bp:1.867
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.4 +/- 24.5bp
Average Position of motif in Background80.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GTGGCTGCCGTGGACA
--NGTTGCCATGGCAA
 A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A
A C G T A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GTGGCTGCCGTGGACA
--GGTTGCCATGGCAA
 A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A
A C G T A C G T C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GTGGCTGCCGTGGACA-
---GTTGCCATGGNAAC
 A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A A C G T
A C G T A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

XBP1/MA0844.1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GTGGCTGCCGTGGACA-
---GATGACGTGGCANT
 A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A A C G T
A C G T A C G T A C G T T C A G T G C A G A C T A C T G T C G A G A T C C T A G G A C T T C A G C A T G G T A C T G C A G A C T G C A T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GTGGCTGCCGTGGACA-
--KGTTGCCATGGCAAC
 A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A A C G T
A C G T A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GTGGCTGCCGTGGACA
--NGCTN---------
 A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GTGGCTGCCGTGGACA-
-CGGTTGCCATGGCAAC
 A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A A C G T
A C G T A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GTGGCTGCCGTGGACA
TWGTCTGV--------
 A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:9
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:GTGGCTGCCGTGGACA--
----GTGCCGTGTGCAAA
 A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

CREB3/MA0638.1/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GTGGCTGCCGTGGACA
--NGATGACGTGGCAN
 A C T G A C G T A C T G A C T G A G T C A C G T A C T G A T G C A G T C A C T G C G A T A C T G A C T G C T G A A G T C G T C A
A C G T A C G T A G C T C A T G T C G A G A C T A C T G C G T A G A T C A C T G C G A T A T C G C A T G G T A C T C G A A G T C