Information for 17-GGTCWGGGTCCTG (Motif 29)

A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
Reverse Opposite:
A G T C G T C A T A C G C T A G C G T A G T A C A G T C A G T C C G A T A C T G C G T A A G T C A G T C
p-value:1e-7
log p-value:-1.736e+01
Information Content per bp:1.860
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.52%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets70.7 +/- 19.6bp
Average Position of motif in Background53.5 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:1
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGTCWGGGTCCTG
AGGTCAAGGTCA--
 A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGTCWGGGTCCTG
AGGTCAAGGTCA--
 A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGTCWGGGTCCTG
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGTCWGGGTCCTG
GGTCTGGCAT---
 A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGTCWGGGTCCTG
AGGTCA--------
 A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGTCWGGGTCCTG
CTGTCTGG------
 A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGTCWGGGTCCTG
--NRRGGGTCTT-
 A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
A C G T A C G T A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGTCWGGGTCCTG
VBSYGTCTGG------
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGTCWGGGTCCTG
AGRGGTCA--------
 A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------GGTCWGGGTCCTG
CGCGCCGGGTCACGTA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C G T A G T C C G T A A C T G A C T G A C T G A C G T A G T C A T G C A C G T A C T G
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T A C G T A C G T A C G T