Information for 17-GDCTGCAGACACA (Motif 24)

C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A
Reverse Opposite:
A C G T A C T G A C G T A C T G A G C T G A T C A C G T A C T G A T G C G C T A C A T G G T C A G A T C
p-value:1e-8
log p-value:-2.030e+01
Information Content per bp:1.750
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif56.7
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets57.5 +/- 27.3bp
Average Position of motif in Background52.5 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:GDCTGCAGACACA-
----CCAGACRSVB
 C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GDCTGCAGACACA
----CCAGACAG-
 C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GDCTGCAGACACA-
----CCAGGAACAG
 C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A A C G T
A C G T A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GDCTGCAGACACA---
CAAATCCAGACATCACA
 A C G T C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GDCTGCAGACACA
----BCAGACWA-
 C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GDCTGCAGACACA---
AGCGGCACACACGCAA
 C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GDCTGCAGACACA
AGAGRRACAGCWGAC---
 A C G T A C G T A C G T A C G T A C G T C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GDCTGCAGACACA
---TGCTGACTCA
 C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A
A C G T A C G T A C G T G A C T C T A G G A T C C A G T A C T G C T G A A T G C G C A T A T G C C T G A

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GDCTGCAGACACA--
AGCAACAGCCGCACC
 C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A A C G T A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GDCTGCAGACACA
NNNVCTGWGYAAACASN
 A C G T A C G T A C G T A C G T C A T G C A G T G A T C C G A T T A C G A G T C C G T A C T A G C T G A T G A C C G T A A G T C G T C A
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A