Information for 13-TTTAAAGGCG (Motif 20)

A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G
Reverse Opposite:
A T G C A C T G G T A C G T A C A G C T A C G T A C G T T C G A C G T A C T G A
p-value:1e-9
log p-value:-2.156e+01
Information Content per bp:1.852
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif50.3
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets58.8 +/- 25.9bp
Average Position of motif in Background46.9 +/- 35.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTTAAAGGCG
TTTAATTGCN
 A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAAGGCG
NATTCAAAT---
 A C G T A C G T A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TTTAAAGGCG---
--TAATGGCGGNC
 A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G A C G T A C G T A C G T
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---TTTAAAGGCG
CCTTTTATAGNC-
 A C G T A C G T A C G T A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TTTAAAGGCG-------
--CAAAGGCGTGGCCAG
 A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TTTAAAGGCG
ACATCAAAGG--
 A C G T A C G T A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTTAAAGGCG
ACWTCAAAGG--
 A C G T A C G T A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G
C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TTTAAAGGCG
CGGTTTCAAA----
 A C G T A C G T A C G T A C G T A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TTTAAAGGCG
AAAGATCAAAGGAA
 A C G T A C G T A C G T A C G T A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

PB0136.1_IRC900814_2/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TTTAAAGGCG-----
ATGGAAAGTCGTAAAA
 A C G T A G C T C G A T A G C T G T C A C G T A C T G A A C T G A C T G A G T C A T C G A C G T A C G T A C G T A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A