Information for 5-CCAGACAGCCTGGCKC (Motif 7)

A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
Reverse Opposite:
T A C G T G A C C A T G A G T C A G T C C G T A A C T G A C T G G A T C A C G T A C T G A C G T A T G C A C G T C T A G A C T G
p-value:1e-16
log p-value:-3.761e+01
Information Content per bp:1.796
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.1 +/- 25.8bp
Average Position of motif in Background74.6 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGCCTGGCKC
CCAGACAG--------
 A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGCCTGGCKC
CCAGACRSVB------
 A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACAGCCTGGCKC
CAAATCCAGACATCACA----
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGCCTGGCKC
BCAGACWA--------
 A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCAGACAGCCTGGCKC
ATGCCAGACN---------
 A C G T A C G T A C G T A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CCAGACAGCCTGGCKC
CGTCTAGACA---------
 A C G T A C G T A C G T A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCAGACAGCCTGGCKC
SCAGYCADGCATGAC-
 A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CCAGACAGCCTGGCKC
AGGTGHCAGACA---------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----CCAGACAGCCTGGCKC
AGGTGNCAGACAG--------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer

Match Rank:10
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CCAGACAGCCTGGCKC
VAAACYKGTHWAACMRGTTT
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T C G G T C A A G T C G T C A C A T G T A G C A G T C C G A T A C T G A C T G G T A C A C T G A G T C
T C G A C T G A C T G A C G T A T A G C G A C T C A T G T C A G G C A T G C A T C G T A C T G A C T G A A G T C G T A C C T A G A T C G G A C T G A C T A G C T