Information for 17-CCATAAATCA (Motif 19)

T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A
Reverse Opposite:
C G A T A C T G C G T A A C G T A C G T G A C T C T G A A C G T A C T G A C T G
p-value:1e-11
log p-value:-2.691e+01
Information Content per bp:1.844
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif36.5
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets57.3 +/- 19.2bp
Average Position of motif in Background52.8 +/- 28.5bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-CCATAAATCA
GCCATAAATCA
 A C G T T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:2
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--CCATAAATCA
GGCCATAAATCA
 A C G T A C G T T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--CCATAAATCA-
GGCCATAAATCAC
 A C G T A C G T T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A A C G T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--CCATAAATCA
GGCCATAAATCA
 A C G T A C G T T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.87
Offset:0
Orientation:forward strand
Alignment:CCATAAATCA
TCATCAATCA
 T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--CCATAAATCA
RGCCATYAATCA
 A C G T A C G T T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-CCATAAATCA-
GYCATCMATCAT
 A C G T T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:8
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--CCATAAATCA
NGYCATAAAWCH
 A C G T A C G T T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PBX1/MA0070.1/Jaspar

Match Rank:9
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CCATAAATCA--
CCATCAATCAAA
 T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Gfi1/MA0038.1/Jaspar

Match Rank:10
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CCATAAATCA---
---CAAATCACTG
 T G A C G T A C C G T A A G C T C T G A C G T A G T C A A C G T A G T C G C T A A C G T A C G T A C G T
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G