Information for 1-GGTASAAAGAAHA (Motif 5)

A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A
Reverse Opposite:
C G A T C T A G A G C T G A C T G T A C A C G T G A C T C G A T A T G C A G C T C T G A A G T C G T A C
p-value:1e-7
log p-value:-1.643e+01
Information Content per bp:1.645
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif22.50%
Number of Background Sequences with motif948.8
Percentage of Background Sequences with motif1.98%
Average Position of motif in Targets51.0 +/- 32.0bp
Average Position of motif in Background51.0 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGTASAAAGAAHA
GGAACAAAGR---
 A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T A C G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GGTASAAAGAAHA----
--AACAAACAACAAGAG
 A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGTASAAAGAAHA-----
---AAAAATAACAAACGG
 A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGTASAAAGAAHA
AGAGTCCAAAGTCCA
 A C G T A C G T A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

PB0182.1_Srf_2/Jaspar

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GGTASAAAGAAHA-----
-GTTAAAAAAAAAAATTA
 A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGTASAAAGAAHA
CANAGNNCAAAGTCCA
 A C G T A C G T A C G T A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGTASAAAGAAHA-
AGAAGAACAAAGGACTA
 A C G T A C G T A C G T A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A A C G T
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGTASAAAGAAHA
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGTASAAAGAAHA
TGGGGCAAAGGTCA
 A C G T A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGTASAAAGAAHA-
ATAAGAACAAAGGACTA
 A C G T A C G T A C G T A C T G T A C G A G C T C T G A T A C G G C T A C G T A C G T A A C T G C G T A C T G A G A T C C G T A A C G T
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A