Information for 1-HTCGGGSTKCWTYTGA (Motif 3)

G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A
Reverse Opposite:
A C G T A G T C G T C A T C G A T G C A C G A T C A T G G T C A G C T A A T G C G A T C G A T C A G T C A T C G C T G A C T A G
p-value:1e-7
log p-value:-1.825e+01
Information Content per bp:1.493
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif42.50%
Number of Background Sequences with motif4170.2
Percentage of Background Sequences with motif8.71%
Average Position of motif in Targets53.2 +/- 25.4bp
Average Position of motif in Background50.4 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0083.1_Tcf7_1/Jaspar

Match Rank:1
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:HTCGGGSTKCWTYTGA------
-----NNTTCCTTTGATCTNNA
 G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C G A T C A G T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G C A

PB0082.1_Tcf3_1/Jaspar

Match Rank:2
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:HTCGGGSTKCWTYTGA------
-----NNTTCCTTTGATCTANA
 G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C G A T C G A T A G C T A G T C A G T C G C A T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T C T G A

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:3
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:HTCGGGSTKCWTYTGA---
-------TNCCTTTGATGT
 G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A T G C A G T C A G T C A G C T A C G T A C G T T A C G C G T A C G A T T A C G G A C T

TCF7L2/MA0523.1/Jaspar

Match Rank:4
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:HTCGGGSTKCWTYTGA-----
-------TNCCTTTGATCTTN
 G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:5
Score:0.49
Offset:5
Orientation:forward strand
Alignment:HTCGGGSTKCWTYTGA------
-----ATTTCCTTTGATCTATA
 G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C G A T C A G T A G C T A G T C A G T C G A C T G A C T C G A T A C T G C G T A C G A T T A G C G C A T C G T A C A G T T G C A

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.49
Offset:5
Orientation:forward strand
Alignment:HTCGGGSTKCWTYTGA------
-----AATCCCTTTGATCTATC
 G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C T G A C G A T A G T C A G T C A G T C G A C T G A C T C G A T A T C G C G T A C G A T T A G C G C A T C G T A C G A T T G A C

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.49
Offset:9
Orientation:reverse strand
Alignment:HTCGGGSTKCWTYTGA---
---------CCTTTGATGT
 G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

LIN54/MA0619.1/Jaspar

Match Rank:8
Score:0.48
Offset:10
Orientation:forward strand
Alignment:HTCGGGSTKCWTYTGA---
----------ATTTGAATT
 G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:9
Score:0.47
Offset:11
Orientation:reverse strand
Alignment:HTCGGGSTKCWTYTGA-----
-----------TTTGAAACCG
 G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:10
Score:0.47
Offset:9
Orientation:reverse strand
Alignment:HTCGGGSTKCWTYTGA---
---------CCTTTGAWGT
 G A T C A G C T T A G C C T A G C T A G C T A G T A C G C G A T C A G T G T A C G C T A A C G T A G C T C A G T T C A G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A C T G C G T A C G T A A T C G A C G T