Information for 21-GAACCTAGTT (Motif 52)

A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A C G T C G T A A C T G A C T G A C G T A C G T A G T C
p-value:1e-2
log p-value:-6.331e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif2.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets85.0 +/- 0.0bp
Average Position of motif in Background34.0 +/- 22.9bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HMBOX1/MA0895.1/Jaspar

Match Rank:1
Score:0.66
Offset:3
Orientation:forward strand
Alignment:GAACCTAGTT---
---ACTAGTTAAC
 A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0040.1_Hmbox1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GAACCTAGTT------
GAAAACTAGTTAACATC
 A C G T A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GAACCTAGTT
TGACCTARTT
 A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T
A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GAACCTAGTT---
TTGACCTANTTATN
 A C G T A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PB0200.1_Zfp187_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAACCTAGTT-----
GAGCCCTTGTCCCTAA
 A C G T A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C T G C T G A C T A G G T A C A G T C A G T C G A C T A G C T T C A G G A C T G A T C A G T C G T A C G A C T G C A T T C A G

PB0159.1_Rfx4_2/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAACCTAGTT-----
TACCCTAGTTACCGA
 A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G C A T G T C A A T G C A T G C G T A C C A G T T C G A A C T G C G A T A C G T C G T A A G T C T A G C T A C G G T C A

PB0181.1_Spdef_2/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GAACCTAGTT-
GATAACATCCTAGTAG
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G

LBX1/MA0618.1/Jaspar

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GAACCTAGTT--
----CTAATTAA
 A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C A G C T G C T A C T G A A C G T A C G T C T G A G C T A

PH0168.1_Hnf1b/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GAACCTAGTT-------
ANNNCTAGTTAACNGNN
 A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T A G C C T A G T C A G A G T C G C A T T C G A C T A G C A G T C G A T C G T A C G T A A G T C T G C A C T A G T G A C G C A T

TFCP2/MA0145.3/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAACCTAGTT-
-AAACCGGTTT
 A C T G C G T A C G T A A G T C A G T C A C G T C G T A A C T G A C G T A C G T A C G T
A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T