Information for 21-GTTAATCCTAGGAATT (Motif 46)

A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
Reverse Opposite:
C G T A C G T A A C G T A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A A C G T A C G T C G T A C G T A A G T C
p-value:1e-3
log p-value:-7.024e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets8.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OTX2/MA0712.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GTTAATCCTAGGAATT
-TTAATCCT-------
 A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTTAATCCTAGGAATT
NYTAATCCYB------
 A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GTTAATCCTAGGAATT
-TTAATCCC-------
 A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GTTAATCCTAGGAATT
GCTAATCC--------
 A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATCCTAGGAATT
NTTGTTAATCCCTCTNN--
 A C G T A C G T A C G T A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
C G T A C A G T G A C T C A T G G A C T C G A T C G T A C G T A A C G T G A T C A G T C A G T C G A C T A G T C A G C T T G C A C T G A A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GTTAATCCTAGGAATT
CTTAATCCC-------
 A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GTTAATCCTAGGAATT
-YTAATCCY-------
 A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

OTX1/MA0711.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTTAATCCTAGGAATT
-TTAATCCG-------
 A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BCL6B/MA0731.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTTAATCCTAGGAATT--
-TGCTTTCTAGGAATTCA
 A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A G C T C T A G A G T C A C G T A C G T A C G T A G T C A C G T C G T A A C T G A C T G C T G A C G T A A G C T A G C T T G A C T G C A

PH0123.1_Obox3/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATCCTAGGAATT
ATAGTTAATCCCCCNNA--
 A C G T A C G T A C G T A C T G A C G T A C G T C G T A C G T A A C G T A G T C A G T C A C G T C G T A A C T G A C T G C G T A C G T A A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A A C G T A C G T