Information for 16-CGTTTCTACTTCA (Motif 41)

A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A C G T A A C T G A C G T C G T A A C T G C G T A C G T A C G T A A G T C A C T G
p-value:1e-3
log p-value:-7.024e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif2.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets91.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGTTTCTACTTCA
AGTTTCAGTTTC-
 A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A
C T G A A T C G A G C T A G C T A C G T T A G C C T G A T A C G C G A T A C G T G A C T A G T C A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:2
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CGTTTCTACTTCA-
-----CCACTTGAA
 A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGTTTCTACTTCA
TCAGTTTCATTTTCC
 A C G T A C G T A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A
C A G T G A T C C T G A T A C G A G C T G C A T A G C T A G T C C T G A A C G T A G C T G C A T A G C T G A T C A G T C

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:4
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CGTTTCTACTTCA
AGTTTCAKTTTC-
 A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A
C T G A T A C G G C A T A G C T A G C T A G T C T C G A A C T G C A G T A G C T A G C T G A T C A C G T

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:5
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGTTTCTACTTCA
ACTTTCACTTTC-
 A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A
C T G A A T G C G A C T C G A T A G C T A G T C C G T A A T G C A C G T A C G T G A C T A G T C A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CGTTTCTACTTCA
NCCGTTGCTANGNGN
 A C G T A C G T A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGTTTCTACTTCA---------
--TTTMCGCTTSABTGAACACN
 A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T C A G T G A C T T G A C G A T C T C A G A T G C G C A T A G C T T A C G C T G A A T C G G A C T C T A G T G C A T C G A A G T C G C T A A T G C T C G A

Atf1/MA0604.1/Jaspar

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:CGTTTCTACTTCA-
------TACGTCAT
 A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T

IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CGTTTCTACTTCA---
-CTTTCANTATGACTV
 A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A A C G T A C G T A C G T
A C G T A T G C G A C T A G C T A G C T A G T C G C T A C A G T C G A T G C T A A C G T A C T G G C T A T A G C G C A T T G A C

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:10
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CGTTTCTACTTCA
ACTTTCGTTTCT------
 A C G T A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C G T A C G T A G T C A C G T C G T A A G T C A C G T A C G T A G T C C G T A
T G C A A T G C A C G T A C G T A C G T A T G C C T A G A C G T A C G T A G C T G A T C A G C T A C G T A C G T A C G T A C G T A C G T A C G T