Information for 2-CTGGGAGGCRGAG (Motif 3)

A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G
Reverse Opposite:
A G T C A C G T A G T C A G C T A C T G A G T C A G T C A C G T A G T C A G T C A G T C C G T A C T A G
p-value:1e-9
log p-value:-2.294e+01
Information Content per bp:1.947
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif7.50%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.7 +/- 24.5bp
Average Position of motif in Background43.0 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CTGGGAGGCRGAG-
----GAGSCCGAGC
 A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTGGGAGGCRGAG-
--RGKGGGCGGAGC
 A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G A C G T
A C G T A C G T C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C

SP1/MA0079.3/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTGGGAGGCRGAG-
---GGGGGCGGGGC
 A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G A C G T
A C G T A C G T A C G T T C A G C T A G C T A G A C T G A C T G G T A C C T A G A C T G C T A G T C A G T G A C

SP2/MA0516.1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTGGGAGGCRGAG-
GGGNGGGGGCGGGGC
 A C G T A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G A C G T
T A C G T A C G T A C G T C G A C T A G C T A G C T A G C T A G A C T G G T A C C T A G A T C G C T A G T C A G T A G C

POL003.1_GC-box/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CTGGGAGGCRGAG---
--AGGGGGCGGGGCTG
 A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G A C G T A C G T A C G T
A C G T A C G T C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G

Sp1(Zf)/Promoter/Homer

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTGGGAGGCRGAG--
---GGGGGCGGGGCC
 A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G A C G T A C G T
A C G T A C G T A C G T T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:7
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----CTGGGAGGCRGAG--
GCMTBCTGGGAGTTGTAGTY
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G A C G T A C G T
C A T G T A G C G T A C A G C T A C G T T G A C A G C T C T A G A C T G C T A G C G T A T C A G G C A T A G C T A C T G C G A T C T G A A C T G A C G T A G T C

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTGGGAGGCRGAG
WDNCTGGGCA------
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:9
Score:0.53
Offset:-5
Orientation:reverse strand
Alignment:-----CTGGGAGGCRGAG--
GCATTCTGGGAATTGTAGTT
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G A C G T A C G T
T C A G T A G C G T C A A G C T A C G T A G T C A G C T A C T G A C T G C T A G C G T A C T G A C G A T A G C T A C T G A C G T C T G A A C T G A C G T A G C T

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CTGGGAGGCRGAG----
NAGANTGGCGGGGNGNA
 A G T C A C G T A C T G A C T G A C T G C G T A A C T G A C T G A G T C T C A G A C T G C G T A A C T G A C G T A C G T A C G T A C G T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A