Information for 1-AWCTRTAAYC (Motif 2)

C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C
Reverse Opposite:
A C T G C T G A A C G T A C G T C G T A A G T C C G T A A C T G C G A T A G C T
p-value:1e-12
log p-value:-2.839e+01
Information Content per bp:1.869
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif20.00%
Number of Background Sequences with motif135.7
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets58.2 +/- 18.4bp
Average Position of motif in Background49.6 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OTX1/MA0711.1/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:AWCTRTAAYC--
----TTAATCCG
 C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:2
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:AWCTRTAAYC--
----YTAATCCY
 C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:AWCTRTAAYC-------
---NNTAATCCNGNCNN
 C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

OTX2/MA0712.1/Jaspar

Match Rank:4
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AWCTRTAAYC--
----TTAATCCT
 C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:5
Score:0.63
Offset:4
Orientation:forward strand
Alignment:AWCTRTAAYC--
----TTAATCCC
 C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T T C G A C G T A C A G T G A T C G A T C G T A C

PB0090.1_Zbtb12_1/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---AWCTRTAAYC----
NNGATCTAGAACCTNNN
 A C G T A C G T A C G T C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C A C G T A C G T A C G T A C G T
T C A G A C G T C T A G C G T A A G C T A G T C A C G T C T G A A C T G G C T A C G T A A G T C T G A C A G C T C G A T G T C A T A C G

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AWCTRTAAYC---
-WWTRTAAACAVG
 C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C A C G T A C G T A C G T
A C G T C G T A G C T A C G A T C T A G A C G T G T C A C G T A C G T A A G T C C G T A T G C A T A C G

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:AWCTRTAAYC---
---CCTAATCCGC
 C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T T G A C G A T C C G A T G C T A G C T A A C G T G T A C A G T C A T C G G A T C

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.61
Offset:5
Orientation:forward strand
Alignment:AWCTRTAAYC---
-----TAATCCCN
 C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G

PH0126.1_Obox6/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AWCTRTAAYC-------
--CNATAATCCGNTTNT
 C T G A G C T A A G T C A C G T C T A G A C G T C G T A C G T A A G C T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A G C C T G A G C T A C G A T C G T A C G T A A C G T G T A C A G T C A T C G G A C T C G A T G A C T C G A T C A G T