Information for 3-GCAACCGGGG (Motif 12)

A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G
Reverse Opposite:
A T G C A T G C T A G C T G A C C A T G A T C G A G C T G C A T A C T G T A G C
p-value:1e-8
log p-value:-1.995e+01
Information Content per bp:1.577
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif300.5
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets56.1 +/- 26.6bp
Average Position of motif in Background49.0 +/- 27.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SCRT2/MA0744.1/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCAACCGGGG-
ATGCAACAGGTGG
 A C G T A C G T A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G A C G T
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G

SCRT1/MA0743.1/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCAACCGGGG---
GAGCAACAGGTGGTT
 A C G T A C G T A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G A C G T A C G T A C G T
T C A G G C T A A C T G G A T C G T C A C G T A G T A C C G T A C T A G A C T G A G C T C A T G A C T G A G C T G A C T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GCAACCGGGG
SCCTAGCAACAG---
 A C G T A C G T A C G T A C G T A C G T A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GCAACCGGGG---
DCHCAGCAGGRGGCC
 A C G T A C G T A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GCAACCGGGG-
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:6
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------GCAACCGGGG
CCGCATAGCAACGGA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCAACCGGGG-
CACAGCAGGGGG
 A C G T A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCAACCGGGG---
CACAGCGGGGGGTC
 A C G T A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G A C G T A C G T A C G T
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCAACCGGGG---
NCGCAGCGGGGGGTC
 A C G T A C G T A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G A C G T A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

ZIC4/MA0751.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCAACCGGGG---
NCNCAGCGGGGGGTC
 A C G T A C G T A T C G T G A C C G T A T C G A T A G C G T A C A C T G A T C G T A C G T A C G A C G T A C G T A C G T
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C