Information for 4-SSSYTYTATA (Motif 3)

A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A
Reverse Opposite:
A G C T C G T A G C A T G C T A C T G A C T G A C T G A T A C G T A C G T A G C
p-value:1e-16
log p-value:-3.847e+01
Information Content per bp:1.505
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif4.93%
Number of Background Sequences with motif442.4
Percentage of Background Sequences with motif1.00%
Average Position of motif in Targets50.6 +/- 34.3bp
Average Position of motif in Background46.3 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.85
Offset:-4
Orientation:reverse strand
Alignment:----SSSYTYTATA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.85
Offset:-4
Orientation:reverse strand
Alignment:----SSSYTYTATA-
NNNNNNCTTTTATAN
 A C G T A C G T A C G T A C G T A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:SSSYTYTATA---
-CCTTTTATAGNC
 A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A A C G T A C G T A C G T
A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:SSSYTYTATA---
-DGWTTTATGRCN
 A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A A C G T A C G T A C G T
A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

CDX2/MA0465.1/Jaspar

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:SSSYTYTATA----
---TTTTATGGCTN
 A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PB0080.1_Tbp_1/Jaspar

Match Rank:6
Score:0.66
Offset:0
Orientation:forward strand
Alignment:SSSYTYTATA------
TCTTTATATATAAATA
 A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A G T C G C A T C G A T G C A T C G T A G C A T C G T A C G A T C G T A C G A T C G T A G C T A G T C A C A G T T C G A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:SSSYTYTATA--
---TTTTATTGC
 A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A A C G T A C G T
A C G T A C G T A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:SSSYTYTATA---
---TTTTATKRGG
 A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:SSSYTYTATA---
---TTTTATTRGN
 A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A A C G T A C G T A C G T
A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:SSSYTYTATA--
--NTTTTATGAC
 A T C G A T G C A T G C A G C T G A C T G A C T C G A T C G T A G C A T T C G A A C G T A C G T
A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C