Information for 8-AAGCAGGCCT (Motif 7)

C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T
Reverse Opposite:
T C G A A T C G A T C G A G T C A T G C A C G T A C T G A G T C C G A T C G A T
p-value:1e-14
log p-value:-3.332e+01
Information Content per bp:1.749
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif4.84%
Number of Background Sequences with motif471.0
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets39.9 +/- 23.8bp
Average Position of motif in Background48.0 +/- 33.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AAGCAGGCCT
-AGCGCGCC-
 C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T
A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AAGCAGGCCT
--CNAGGCCT
 C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T
A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:AAGCAGGCCT--
----AGGCCTAG
 C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

Zfx/MA0146.2/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:AAGCAGGCCT-------
---CAGGCCNNGGCCNN
 C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C C T G A C T A G A C T G T A G C A G T C A C G T T G A C C T A G T A C G G A T C A T G C T A G C T A G C

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGCAGGCCT
CAGCC-----
 C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AAGCAGGCCT----
NTCGCGCGCCTTNNN
 A C G T C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T A C G T A C G T A C G T A C G T
C G T A C G A T A T G C C T A G T A G C A T C G A T G C A C T G A T G C A T G C G A C T C G A T G C A T C G T A A G C T

PB0009.1_E2F3_1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AAGCAGGCCT----
ANCGCGCGCCCTTNN
 A C G T C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T A C G T A C G T A C G T A C G T
C G T A C G A T T A G C C T A G T A G C A T C G A T G C A C T G A G T C A T G C G A T C C G A T G C A T C G T A A G C T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AAGCAGGCCT
DCTCAGCAGG---
 A C G T A C G T A C G T C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AAGCAGGCCT---
ACTATGCCAACCTACC
 A C G T A C G T A C G T C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----AAGCAGGCCT
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C T G C A T A C G C T A G A T G C A T G C A G C T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A