Information for 4-GGAGATTAGV (Motif 3)

A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C
Reverse Opposite:
A T C G A G T C A C G T C G T A C G T A C G A T A G T C A G C T A G T C G T A C
p-value:1e-22
log p-value:-5.214e+01
Information Content per bp:1.722
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif7.20%
Number of Background Sequences with motif655.1
Percentage of Background Sequences with motif1.41%
Average Position of motif in Targets59.2 +/- 26.5bp
Average Position of motif in Background51.6 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:1
Score:0.83
Offset:1
Orientation:forward strand
Alignment:GGAGATTAGV
-RGGATTAR-
 A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C
A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GGAGATTAGV
AAGAGGATTAG-
 A C G T A C G T A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

GSC2/MA0891.1/Jaspar

Match Rank:3
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GGAGATTAGV
GNGGATTAGN
 A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GGAGATTAGV
NNGGATTAGN
 A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GGAGATTAGV----
AGGGGGATTAGCTGCC
 A C G T A C G T A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C A C G T A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

PITX3/MA0714.1/Jaspar

Match Rank:6
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GGAGATTAGV
-GGGATTANN
 A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C
A C G T C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G

PH0015.1_Crx/Jaspar

Match Rank:7
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----GGAGATTAGV--
CGTTGGGGATTAGCCT
 A C G T A C G T A C G T A C G T A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGAGATTAGV
VRGGATTARN
 A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

Pitx1/MA0682.1/Jaspar

Match Rank:9
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GGAGATTAGV
-GGGATTAA-
 A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C
A C G T C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:GGAGATTAGV
--GGATTAGC
 A C T G C T A G T C G A A C T G C G T A A C G T G C A T C G T A T C A G T A G C
A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C