Information for 12-CCAAATCCAGCCA (Motif 17)

A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A
Reverse Opposite:
A C G T A C T G A T C G G T A C C G A T A C T G A C T G G T C A A C G T A C G T A C G T A C T G C T A G
p-value:1e-8
log p-value:-1.963e+01
Information Content per bp:1.929
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.2 +/- 21.3bp
Average Position of motif in Background85.6 +/- 7.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCAAATCCAGCCA-----
-CAAATCCAGACATCACA
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

PB0185.1_Tcf1_2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCAAATCCAGCCA-
NNTAATCCNGNCNN
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A A C G T
G A T C G T A C G C A T T G C A G T C A G A C T G T A C A G T C T C A G A T C G C T A G A G T C T G C A C G T A

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCAAATCCAGCCA
ACCACATCCTGT--
 A C G T A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A
T G C A A G T C A G T C C G T A A G T C C G T A A C G T A G T C A G T C C A G T A T C G A G C T A C G T A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCAAATCCAGCCA
GCTAATCC-----
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CCAAATCCAGCCA
--TAATCCCN---
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T A C G T C G A T C T G A C G T A C A G T A G T C G A T C G A T C A C T G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CCAAATCCAGCCA-
------BCAGACWA
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PITX3/MA0714.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCAAATCCAGCCA
CTTAATCCC----
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A
T A G C G A C T G C A T C T G A C T G A C A G T G T A C A G T C G A T C A C G T A C G T A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CCAAATCCAGCCA
NYTAATCCYB---
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CCAAATCCAGCCA
---ATGCCAGACN
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCAAATCCAGCCA
-ATAATCCC----
 A G T C A G T C C G T A C G T A C G T A A C G T A G T C A G T C C G T A A C T G A T G C A G T C C G T A
A C G T G C T A C G A T C T G A C G T A A C G T A G T C A G T C G T A C A C G T A C G T A C G T A C G T