Information for 1-CTGGNHWDYRTCA (Motif 1)

A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A
Reverse Opposite:
C G A T C T A G C G T A A G T C T C A G G T A C C G T A C G T A G C T A T A G C A G T C C G T A A C T G
p-value:1e-160
log p-value:-3.696e+02
Information Content per bp:1.673
Number of Target Sequences with motif310.0
Percentage of Target Sequences with motif38.46%
Number of Background Sequences with motif2792.1
Percentage of Background Sequences with motif5.99%
Average Position of motif in Targets51.6 +/- 19.9bp
Average Position of motif in Background50.9 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--CTGGNHWDYRTCA
GYCTGGYYTNTGTCA
 A C G T A C G T A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTGGNHWDYRTCA
GGTCTGGCAT------
 A C G T A C G T A C G T A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CTGGNHWDYRTCA-
ACATCTGGWWTYAATTAR
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A A C G T
T G C A G T A C C G T A A C G T T G A C C G A T A C T G A C T G C G A T C G A T G C A T A G C T G C T A C T G A A C G T G A C T G C T A C T G A

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTGGNHWDYRTCA
GCTGTG--------
 A C G T A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CTGGNHWDYRTCA
WDNCTGGGCA------
 A C G T A C G T A C G T A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:6
Score:0.56
Offset:9
Orientation:reverse strand
Alignment:CTGGNHWDYRTCA--
---------GTCATN
 A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CTGGNHWDYRTCA-
----ATTGCATCAT
 A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A A C G T
A C G T A C G T A C G T A C G T T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CTGGNHWDYRTCA-
-------NTGTCAN
 A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CTGGNHWDYRTCA
-------ACGTCA
 A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A G T C T C A G A C G T G T A C C G T A

Atf1/MA0604.1/Jaspar

Match Rank:10
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:CTGGNHWDYRTCA-
------TACGTCAT
 A G T C A C G T A C T G A T C G C G A T G C A T G C A T C A T G A G T C T C A G A C G T A G T C G C T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T