p-value: | 1e-9 |
log p-value: | -2.293e+01 |
Information Content per bp: | 1.653 |
Number of Target Sequences with motif | 64.0 |
Percentage of Target Sequences with motif | 7.19% |
Number of Background Sequences with motif | 1408.0 |
Percentage of Background Sequences with motif | 2.93% |
Average Position of motif in Targets | 49.6 +/- 26.2bp |
Average Position of motif in Background | 50.0 +/- 31.8bp |
Strand Bias (log2 ratio + to - strand density) | 0.5 |
Multiplicity (# of sites on avg that occur together) | 1.05 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer
Match Rank: | 1 |
Score: | 0.81 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | CTGCCAGACA- ---CCAGACAG |
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PB0060.1_Smad3_1/Jaspar
Match Rank: | 2 |
Score: | 0.80 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --CTGCCAGACA----- CAAATCCAGACATCACA |
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Hand1::Tcf3/MA0092.1/Jaspar
Match Rank: | 3 |
Score: | 0.80 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | CTGCCAGACA ATGCCAGACN |
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Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer
Match Rank: | 4 |
Score: | 0.78 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | CTGCCAGACA--- ---CCAGACRSVB |
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Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer
Match Rank: | 5 |
Score: | 0.77 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --CTGCCAGACA AGGTGHCAGACA |
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SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar
Match Rank: | 6 |
Score: | 0.75 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --CTGCCAGACA- AGGTGNCAGACAG |
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Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer
Match Rank: | 7 |
Score: | 0.73 |
Offset: | 3 |
Orientation: | reverse strand |
Alignment: | CTGCCAGACA- ---BCAGACWA |
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Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer
Match Rank: | 8 |
Score: | 0.67 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -CTGCCAGACA- SCTGTCAVTCAV |
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NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer
Match Rank: | 9 |
Score: | 0.65 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | CTGCCAGACA TTGCCAAG-- |
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NFIC/MA0161.1/Jaspar
Match Rank: | 10 |
Score: | 0.65 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | CTGCCAGACA -TGCCAA--- |
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