Information for 12-TGGCAAAKGATAMWGA (Motif 20)

A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
Reverse Opposite:
A G C T A G T C G C T A A C G T C A G T C T G A A C G T A G T C G T A C A C G T G A C T A C G T A T C G G T A C A G T C G T C A
p-value:1e-9
log p-value:-2.218e+01
Information Content per bp:1.751
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif5.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.0 +/- 24.3bp
Average Position of motif in Background55.9 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT1::STAT2/MA0517.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TGGCAAAKGATAMWGA
-GGAAANTGAAACTNA
 A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
A C G T T C A G C T A G C T G A C G T A T C G A T G C A G A C T C T A G T C G A C G T A C T G A A T G C G A C T C T A G G T C A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TGGCAAAKGATAMWGA
TAGGGCAAAGGTCA----
 A C G T A C G T A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T A C G T A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAAAKGATAMWGA
TGGGGCAAAGGTCA----
 A C G T A C G T A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:4
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TGGCAAAKGATAMWGA
GTAGGGCAAAGGTCA----
 A C G T A C G T A C G T A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:5
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:TGGCAAAKGATAMWGA
-GWAAYHTGABMC---
 A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C A C G T A C G T A C G T

TFEC/MA0871.1/Jaspar

Match Rank:6
Score:0.52
Offset:1
Orientation:forward strand
Alignment:TGGCAAAKGATAMWGA
-ATCACGTGAC-----
 A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
A C G T T C G A C A G T G T A C C G T A A G T C T C A G G A C T A C T G T C G A A G T C A C G T A C G T A C G T A C G T A C G T

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:TGGCAAAKGATAMWGA
-GTCACATGAY-----
 A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
A C G T T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAAAKGATAMWGA
CTTGGCAA----------
 A C G T A C G T A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:forward strand
Alignment:TGGCAAAKGATAMWGA
-GWAAYHTGAKMC---
 A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T A C G T A C G T

GATA5/MA0766.1/Jaspar

Match Rank:10
Score:0.51
Offset:7
Orientation:forward strand
Alignment:TGGCAAAKGATAMWGA
-------AGATAAGA-
 A C G T C T A G A C T G A T G C C G T A C G T A G T C A A C T G C T A G C G T A A G C T G T C A G T C A C G A T A C T G C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C T G C T G A A C G T G C T A C T G A T A C G T C G A A C G T