Information for 8-AGATAATCTC (Motif 6)

G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C
Reverse Opposite:
C T A G C T G A A C T G G T C A A G C T C G A T T C G A G C A T A G T C C A G T
p-value:1e-14
log p-value:-3.308e+01
Information Content per bp:1.717
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif6.09%
Number of Background Sequences with motif613.8
Percentage of Background Sequences with motif1.39%
Average Position of motif in Targets45.5 +/- 22.7bp
Average Position of motif in Background49.2 +/- 39.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---AGATAATCTC---
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PH0123.1_Obox3/Jaspar

Match Rank:2
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--AGATAATCTC-----
ATAGTTAATCCCCCNNA
 A C G T A C G T G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C A C G T A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---AGATAATCTC----
NANANTTAATCCCNNNN
 A C G T A C G T A C G T G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PH0125.1_Obox5_2/Jaspar

Match Rank:4
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---AGATAATCTC----
GATAATTAATCCCTCTT
 A C G T A C G T A C G T G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C A C G T A C G T A C G T A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

PH0121.1_Obox1/Jaspar

Match Rank:5
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AGATAATCTC-----
NTAGTTAATCCCCTTAN
 A C G T A C G T G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C A C G T A C G T A C G T A C G T A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PH0122.1_Obox2/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--AGATAATCTC-----
ATAGTTAATCCCCCTCA
 A C G T A C G T G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C A C G T A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AGATAATCTC
--YTAATCCY
 G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C
A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGATAATCTC-
-NYTAATCCYB
 G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C A C G T
A C G T A T C G G A C T C G A T C G T A C G T A C A G T G A T C G A T C G A T C A G C T

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.69
Offset:2
Orientation:forward strand
Alignment:AGATAATCTC
--TTAATCCT
 G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C
A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGATAATCTC
-GCTAATCC-
 G T C A T C A G C G T A A G C T C G T A T C G A A C G T A G T C A G C T A G T C
A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T