Information for 20-GAGGAGGTTTCCAGCG (Motif 27)

C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G
Reverse Opposite:
G T A C A C T G A G T C C G A T A C T G A C T G C G T A C T G A C G T A A G T C A G T C A G C T A G T C A G T C A G C T A G T C
p-value:1e-8
log p-value:-1.985e+01
Information Content per bp:1.885
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.5 +/- 29.7bp
Average Position of motif in Background43.5 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GAGGAGGTTTCCAGCG
--GGGGATTTCC----
 C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GAGGAGGTTTCCAGCG
--GGGGATTTCC----
 C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGGAGGTTTCCAGCG
-NGGGGATTTCCC---
 C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G
A C G T C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GAGGAGGTTTCCAGCG
--GGGAATTTCC----
 C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGGAGGTTTCCAGCG
--GGGAATTTCC----
 C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GAGGAGGTTTCCAGCG
------DTTTCCCGCC
 C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A G C A T G A C T C A G T A T G C A T G C A T G C A C T G A T G C A T G C

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GAGGAGGTTTCCAGCG-
-----VDTTTCCCGCCA
 C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C G A T A C G T A G C T A G C T A G T C A T G C A G T C A C T G A T G C A T G C G C T A

NFATC2/MA0152.1/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GAGGAGGTTTCCAGCG
------TTTTCCA---
 C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T G A C T A C G T G T A C A G T C G C T A A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAGGAGGTTTCCAGCG
----AGGGTAACAGC-
 C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A C G T A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GAGGAGGTTTCCAGCG
------ATTTCCTGTN
 C T A G C T G A C T A G A C T G C T G A A C T G C T A G A C G T A G C T C G A T A G T C A G T C C G T A A C T G A G T C A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A G C T A C G T A C G T A G T C A G T C A C G T A C T G G A C T A C G T