Information for 11-CTGGCRRASAGAGRRM (Motif 14)

A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C
Reverse Opposite:
A C T G G A C T A G T C A G T C A G C T A G T C A C G T A T C G A C G T A G C T A G C T A C T G A G T C A G T C C G T A A C T G
p-value:1e-11
log p-value:-2.563e+01
Information Content per bp:1.836
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.0 +/- 17.9bp
Average Position of motif in Background26.2 +/- 3.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTGGCRRASAGAGRRM
TTGGCA----------
 A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCRRASAGAGRRM-
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCRRASAGAGRRM
NTTGGCANN--------
 A C G T A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGGCRRASAGAGRRM
CTTGGCAA---------
 A C G T A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCRRASAGAGRRM-
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CTGGCRRASAGAGRRM
GGTCTGGCAT---------
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer

Match Rank:7
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CTGGCRRASAGAGRRM-
CNGCTGNNGNNNNCAGATAA
 A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C A C G T
T G A C C T A G A C T G T A G C C G A T A C T G A T G C C A T G A T C G A T C G A T C G T A G C C T G A T A G C G C T A A C T G C G T A A G C T C G T A C T G A

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCRRASAGAGRRM
AGGTGNCAGACAG-----
 A C G T A C G T A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:9
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------CTGGCRRASAGAGRRM
CAATCACTGGCAGAAT------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--CTGGCRRASAGAGRRM
TNNGGGCAG---------
 A C G T A C G T A G T C A C G T A C T G A C T G A G T C T C A G T C A G C G T A A T G C C G T A A C T G C T G A A C T G C T A G C T A G G T A C
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T