Information for 8-CYWKCTAGGTCAM (Motif 12)

A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C
Reverse Opposite:
A C T G A C G T A C T G C G T A A G T C A G T C A C G T C G T A A C T G G T C A C G A T C T G A A C T G
p-value:1e-11
log p-value:-2.563e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.2 +/- 17.8bp
Average Position of motif in Background56.9 +/- 9.3bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA/MA0071.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:forward strand
Alignment:CYWKCTAGGTCAM
--ATCAAGGTCA-
 A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C
A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.78
Offset:2
Orientation:forward strand
Alignment:CYWKCTAGGTCAM
--AAYTAGGTCA-
 A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C
A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:CYWKCTAGGTCAM
---TCAAGGTCAN
 A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C
A C G T A C G T A C G T A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:4
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CYWKCTAGGTCAM
TATAAGTAGGTCAA
 A C G T A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.73
Offset:6
Orientation:forward strand
Alignment:CYWKCTAGGTCAM
------AGGTCA-
 A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:6
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CYWKCTAGGTCAM-
---TCAAGGTCATA
 A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C A C G T
A C G T A C G T A C G T G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CYWKCTAGGTCAM
---TCAAGGTCAT
 A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C
A C G T A C G T A C G T G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T

NR4A2/MA0160.1/Jaspar

Match Rank:8
Score:0.72
Offset:5
Orientation:forward strand
Alignment:CYWKCTAGGTCAM
-----AAGGTCAC
 A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.70
Offset:4
Orientation:forward strand
Alignment:CYWKCTAGGTCAM
----TRAGGTCA-
 A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C
A C G T A C G T A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CYWKCTAGGTCAM
--BTCAAGGTCA-
 A G T C A G C T C G T A A C G T A G T C G A C T C G T A A C T G A C T G A C G T A G T C C G T A G T A C
A C G T A C G T A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T