Information for 7-GCATGGCACTTTA (Motif 19)

A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A
Reverse Opposite:
C G A T G T C A T C G A C G T A C T A G A C G T T C A G A G T C A G T C C G T A A C G T A T C G A T G C
p-value:1e-10
log p-value:-2.304e+01
Information Content per bp:1.675
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif110.7
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets43.8 +/- 23.3bp
Average Position of motif in Background51.4 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX2-8/MA0673.1/Jaspar

Match Rank:1
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GCATGGCACTTTA-
-----CCACTTGAA
 A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCATGGCACTTTA-
----RSCACTYRAG
 A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

NKX2-3/MA0672.1/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCATGGCACTTTA-
----ACCACTTGAA
 A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:GCATGGCACTTTA
---MRSCACTYAA
 A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A
A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCATGGCACTTTA-
----NSCACTYVAV
 A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A A C G T
A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

Myb/MA0100.2/Jaspar

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GCATGGCACTTTA
---TGGCAGTTGN
 A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A
A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

NKX3-2/MA0122.2/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GCATGGCACTTTA
----ACCACTTAA
 A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A
A C G T A C G T A C G T A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

ISL2/MA0914.1/Jaspar

Match Rank:8
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GCATGGCACTTTA
-----GCACTTAA
 A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A
A C G T A C G T A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

PB0147.1_Max_2/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----GCATGGCACTTTA
NNGTCGCGTGNCAC----
 A C G T A C G T A C G T A C G T A C G T A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GCATGGCACTTTA
GGTTGGCAT----
 A T C G A T G C G T C A C G A T C T A G T C A G A G T C G T C A A G T C C G A T A C G T A C G T C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T