Information for 23-TGTCTGGCGC (Motif 40)

A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C A C T G A G T C A G T C C G T A A C T G C G T A A G T C C G T A
p-value:1e-6
log p-value:-1.426e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.0 +/- 16.7bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGCGC
CTGTCTGG---
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:TGTCTGGCGC--
TGTCTGDCACCT
 A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.76
Offset:-5
Orientation:reverse strand
Alignment:-----TGTCTGGCGC--
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TGTCTGGCGC
VBSYGTCTGG---
 A C G T A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGCGC--
CTGTCTGTCACCT
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGTCTGGCGC
TWGTCTGV---
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGTCTGGCGC
GGTCTGGCAT
 A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

E2F1/MA0024.3/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGTCTGGCGC----
--TTTGGCGCCAAA
 A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G A T C A G T T C A G A T C G A T G C C T A G A T G C A T G C G C T A G C T A C G T A

PB0113.1_E2F3_2/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TGTCTGGCGC------
NNNNTTGGCGCCGANNN
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

PB0112.1_E2F2_2/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TGTCTGGCGC------
NNNNTTGGCGCCGANNN
 A C G T A C G T A C T G A C G T A G T C A C G T A C T G A C T G A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G