Information for 2-RAMAGAGWTTAATCWG (Motif 3)

C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G
Reverse Opposite:
G A T C C G A T A C T G G C T A A C G T G C A T C G T A C T G A C G A T T A G C A G C T T A G C G A C T A C G T C G A T A G T C
p-value:1e-17
log p-value:-3.950e+01
Information Content per bp:1.623
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif4.01%
Number of Background Sequences with motif216.1
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets46.8 +/- 21.3bp
Average Position of motif in Background49.0 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:RAMAGAGWTTAATCWG
---RGCCATYAATCA-
 C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G
A C G T A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

PH0130.1_Otx2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:RAMAGAGWTTAATCWG-
TGTAGGGATTAATTGTC
 C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0138.1_Pitx2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:RAMAGAGWTTAATCWG-
TGAAGGGATTAATCATC
 C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RAMAGAGWTTAATCWG-
--NAGATWNBNATCTNN
 C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G A C G T
A C G T A C G T A T G C C G T A A C T G C G T A A C G T G C T A T C G A A G C T C G A T C G T A A C G T A G T C C G A T A C T G G A T C

GATA5/MA0766.1/Jaspar

Match Rank:5
Score:0.57
Offset:7
Orientation:reverse strand
Alignment:RAMAGAGWTTAATCWG
-------TCTTATCT-
 C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T G C G A C T C G A T C G T A A G C T A G T C C G A T A C G T

Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:RAMAGAGWTTAATCWG-
-------YCTTATCWVN
 C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T G C G A C T G C A T C G T A A C G T A G T C C G A T T A C G A T G C

OTX1/MA0711.1/Jaspar

Match Rank:7
Score:0.56
Offset:8
Orientation:forward strand
Alignment:RAMAGAGWTTAATCWG
--------TTAATCCG
 C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T T A G C A T G C A T C G

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:RAMAGAGWTTAATCWG
-----TCATCAATCA-
 C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G
A C G T A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

OTX2/MA0712.1/Jaspar

Match Rank:9
Score:0.56
Offset:8
Orientation:forward strand
Alignment:RAMAGAGWTTAATCWG
--------TTAATCCT
 C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C G T A C G T A C A G T G A T C A G T C A C G T

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:10
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:RAMAGAGWTTAATCWG
-------YSTTATCT-
 C T A G C G T A T G C A C T G A A T C G C T G A A T C G G C T A A G C T C G A T C G T A T G C A C G A T G T A C G C T A C T A G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G A G C T C G A T C T G A C G A T A T G C C G A T A C G T