Information for 25-CAGGAGGGTTAGC (Motif 33)

A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C
Reverse Opposite:
A C T G A G T C A C G T C G T A C G T A A G T C A G T C A G T C A C G T A G T C A G T C A C G T A C T G
p-value:1e-3
log p-value:-9.016e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.27%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets33.7 +/- 18.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Crx/MA0467.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGGAGGGTTAGC
-AAGAGGATTAG-
 A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C
A C G T T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CAGGAGGGTTAGC----
-AGGGGGATTAGCTGCC
 A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C G T A C G T
A C G T T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:CAGGAGGGTTAGC
-----GGATTAGC
 A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C

PH0015.1_Crx/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGGAGGGTTAGC--
CGTTGGGGATTAGCCT
 A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C A C G T A C G T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T

PH0123.1_Obox3/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CAGGAGGGTTAGC---
TGAGGGGGATTAACTAT
 A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C G T
G C A T A T C G T C G A T A C G C T A G C T A G C T A G C A T G G C T A A C G T G A C T C G T A C G T A G T A C C G A T G T C A G A C T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CAGGAGGGTTAGC
---VRGGATTARN
 A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C
A C G T A C G T A C G T T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CAGGAGGGTTAGC
CAGGTGAGG----
 A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C
A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G A C G T A C G T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CAGGAGGGTTAGC
---NNGGATTAGN
 A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C
A C G T A C G T A C G T C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C

PH0122.1_Obox2/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAGGAGGGTTAGC---
TGAGGGGGATTAACTAT
 A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C A C G T A C G T A C G T
C G A T A C T G T C G A C T A G C T A G C T A G C T A G C A T G G T C A C A G T G C A T C G T A C G T A G T A C C G A T G T C A G A C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGGAGGGTTAGC
CACAGCAGGGGG---
 A C G T A C G T A G T C C G T A A C T G A C T G C G T A A C T G A C T G A C T G A C G T A C G T C G T A A C T G A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T