Information for 4-GGTGGCAGTA (Motif 2)

T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A
Reverse Opposite:
G C A T G T C A T A G C G C A T A C T G G T A C T G A C T G C A G T A C A G T C
p-value:1e-40
log p-value:-9.419e+01
Information Content per bp:1.666
Number of Target Sequences with motif101.0
Percentage of Target Sequences with motif11.66%
Number of Background Sequences with motif1038.6
Percentage of Background Sequences with motif2.19%
Average Position of motif in Targets54.1 +/- 23.0bp
Average Position of motif in Background51.5 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Myb/MA0100.2/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:GGTGGCAGTA--
--TGGCAGTTGN
 T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A A C G T A C G T
A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

PB0149.1_Myb_2/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGTA-----
NNNTGGCAGTTGGTNN
 A C G T T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A A C G T A C G T A C G T A C G T A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

Hic1/MA0739.1/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGTA
GGTTGGCAT--
 A C G T T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GGTGGCAGTA--
--TGGCAGTTGG
 T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A A C G T A C G T
A C G T A C G T G A C T C T A G C T A G A G T C T G C A A C T G A C G T A C G T C T A G T C A G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGTA
VBTGWCAGCB
 T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A
T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

PH0164.1_Six4/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAGTA--
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGTGGCAGTA
AGGTGTCA---
 A C G T T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A
C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGGCAGTA-
NGTAGGTTGGCATNNN
 A C G T A C G T A C G T A C G T A C G T T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGTGGCAGTA
ARNTGACA---
 A C G T T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGTGGCAGTA
CTTGGCAA--
 T C A G C A T G A C G T A C T G C A T G T G A C C G T A A T C G C A G T C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T