Information for 4-CGCCTGGCAGTCT (Motif 6)

G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T
Reverse Opposite:
G T C A A T C G C G T A A G T C C G A T C T A G T A G C A G T C C G T A A C T G C T A G G T A C A C T G
p-value:1e-18
log p-value:-4.174e+01
Information Content per bp:1.798
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets43.3 +/- 20.3bp
Average Position of motif in Background60.5 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGCCTGGCAGTCT
-GSCTGTCACTCA
 G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T
A C G T C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:CGCCTGGCAGTCT
--CTTGGCAA---
 G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CGCCTGGCAGTCT-
--NCTGTCAATCAN
 G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CGCCTGGCAGTCT-
--SCTGTCAVTCAV
 G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PH0141.1_Pknox2/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGCCTGGCAGTCT
AAGCACCTGTCAATAT
 A C G T A C G T A C G T G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGCCTGGCAGTCT
GGTCTGGCAT---
 G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CGCCTGGCAGTCT-
----TGGCAGTTGN
 G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T C G A T A C T G C T A G A G T C C G T A A C T G A G C T A C G T C T A G T C A G

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CGCCTGGCAGTCT----
---CTGGCAGNCTGCCA
 G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CGCCTGGCAGTCT
-VGCTGWCAVB--
 G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGCCTGGCAGTCT
NNCACCTGNN-----
 A C G T A C G T G T A C A C T G A G T C A G T C C G A T A C T G A C T G A G T C C G T A A C T G C G A T A T G C A C G T
A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T A C G T A C G T A C G T