Information for 3-CAGACATCCHGGCBCC (Motif 5)

A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
Reverse Opposite:
C A T G A T C G T G A C A T C G T A G C G A T C C G T A A C T G A C T G G T C A C A G T A C T G C G A T A G T C A G C T C T A G
p-value:1e-17
log p-value:-4.060e+01
Information Content per bp:1.708
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 26.6bp
Average Position of motif in Background88.4 +/- 4.2bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAGACATCCHGGCBCC
CCAGACRSVB-------
 A C G T A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGACATCCHGGCBCC
CCAGACAG---------
 A C G T A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------CAGACATCCHGGCBCC
CAAATCCAGACATCACA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGACATCCHGGCBCC
BCAGACWA---------
 A C G T A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGACATCCHGGCBCC
SCAGYCADGCATGAC--
 A C G T A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------CAGACATCCHGGCBCC
AGGTGHCAGACA----------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----CAGACATCCHGGCBCC
ATGCCAGACN----------
 A C G T A C G T A C G T A C G T A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SPDEF/MA0686.1/Jaspar

Match Rank:8
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:CAGACATCCHGGCBCC
--TACATCCGGGT---
 A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
A C G T A C G T G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T A C G T A C G T A C G T

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CAGACATCCHGGCBCC
---ACATCCTGNT---
 A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
A C G T A C G T A C G T C T G A A T G C C G T A A C G T A G T C A G T C A C G T A C T G A T C G G C A T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------CAGACATCCHGGCBCC
AGGTGNCAGACAG---------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T G A C T A G C G T A A G T C G T C A C A G T T G A C T A G C G C A T C T A G A C T G T A G C A C T G A T G C G T A C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T