Information for 21-GAKAKTARATCWA (Motif 39)

A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A
Reverse Opposite:
A C G T C G T A A C T G C G T A A C G T A G T C A C G T C G T A G T C A A C G T G T A C A C G T A T G C
p-value:1e-7
log p-value:-1.770e+01
Information Content per bp:1.874
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.7 +/- 26.5bp
Average Position of motif in Background43.6 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:1
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----GAKAKTARATCWA--
NNNNNBAGATAWYATCTVHN
 A C G T A C G T A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A A C G T A C G T
C T G A C T G A C T A G T C G A C G T A A T G C C G T A A C T G C G T A A C G T C T G A C G A T A G C T C G T A A C G T A G T C C G A T T A C G G T C A G C A T

PH0124.1_Obox5_1/Jaspar

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GAKAKTARATCWA
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

PB0125.1_Gata3_2/Jaspar

Match Rank:3
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GAKAKTARATCWA-----
NNNNNCGATANNATCTNNNNAN
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A A C G T A C G T A C G T A C G T A C G T
C A G T C G T A C G T A T A C G A G C T G A T C C T A G T C G A A G C T C T G A T G C A C G T A C T G A C A G T G A T C C G A T T C G A A G T C G C T A C G T A T G C A C T G A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GAKAKTARATCWA-
----HNRAATCAAT
 A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A A C G T
A C G T A C G T A C G T A C G T G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

PH0125.1_Obox5_2/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GAKAKTARATCWA
NANAGGGATTAATTATN
 A C G T A C G T A C G T A C G T A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

DUXA/MA0884.1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAKAKTARATCWA
NTGATTAAATTAN
 A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A
G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G

PH0014.1_Cphx/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAKAKTARATCWA-
ATGATCGAATCAAA
 A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A A C G T
C T G A C G A T T C A G C G T A C A G T A T G C T A C G T G C A G T C A G A C T A G T C C G T A T C G A G C T A

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAKAKTARATCWA
GGCCATAAATCAC
 A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAKAKTARATCWA
GGCCATAAATCA-
 A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GAKAKTARATCWA
RGGATTAR-----
 A T C G C G T A A C T G C G T A A C G T C G A T C G T A T C A G C G T A A C G T A G T C C G A T C G T A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T A C G T A C G T