Information for 21-GGATWAGCAG (Motif 38)

A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G
Reverse Opposite:
G A T C A C G T A T C G G T A C A C G T C G A T C G T A A G C T G A T C A G T C
p-value:1e-8
log p-value:-1.869e+01
Information Content per bp:1.810
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif36.9
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets53.5 +/- 28.2bp
Average Position of motif in Background48.8 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GGATWAGCAG
GGATTAGC--
 A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G
T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--GGATWAGCAG
NNGGATTAGN--
 A C G T A C G T A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GGATWAGCAG
GGGATTANN--
 A C G T A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:4
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GGATWAGCAG
GNGGATTAGN--
 A C G T A C G T A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--GGATWAGCAG
VRGGATTARN--
 A C G T A C G T A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GGATWAGCAG--
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T A C G T A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GGATWAGCAG
RGGATTAR---
 A C G T A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:8
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGATWAGCAG
GGGATTAA---
 A C G T A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GGATWAGCAG
NGGGATTA----
 A C G T A C G T A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T

RHOXF1/MA0719.1/Jaspar

Match Rank:10
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGATWAGCAG
NGGATTAN---
 A C G T A C T G C T A G C T G A A C G T C G T A C G T A A C T G A T G C C G T A C T A G
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T