Information for 2-WGAVAHAMACCAGACM (Motif 3)

G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C
Reverse Opposite:
C A T G A T C G A G C T A T G C C G A T A C T G A T C G C G A T A C G T C G A T C A T G G A C T A C G T A G C T G A T C C G T A
p-value:1e-43
log p-value:-9.984e+01
Information Content per bp:1.570
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif13.44%
Number of Background Sequences with motif1090.1
Percentage of Background Sequences with motif2.29%
Average Position of motif in Targets53.2 +/- 21.0bp
Average Position of motif in Background51.6 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:WGAVAHAMACCAGACM
TGACANARRCCAGRC-
 G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.70
Offset:6
Orientation:reverse strand
Alignment:WGAVAHAMACCAGACM
------ATGCCAGACN
 G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.66
Offset:4
Orientation:forward strand
Alignment:WGAVAHAMACCAGACM-----
----CAAATCCAGACATCACA
 G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.65
Offset:9
Orientation:reverse strand
Alignment:WGAVAHAMACCAGACM---
---------CCAGACRSVB
 G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.65
Offset:9
Orientation:reverse strand
Alignment:WGAVAHAMACCAGACM-
---------CCAGACAG
 G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:WGAVAHAMACCAGACM
AGAGRRACAGCWGAC-
 G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.59
Offset:9
Orientation:reverse strand
Alignment:WGAVAHAMACCAGACM-
---------BCAGACWA
 G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:WGAVAHAMACCAGACM
--------CACAGN--
 G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:WGAVAHAMACCAGACM
------AAACCACAGC
 G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-WGAVAHAMACCAGACM-
YTAATTRAWWCCAGATGT
 A C G T G C A T C T A G T C G A T G C A C T G A G T A C G C T A T G C A G C T A T A G C G T A C C G T A A T C G T C G A T A G C G T A C A C G T
G A C T C G A T C T G A G T C A G A C T C G A T T C G A C G T A G C T A G C T A T G A C G T A C C G T A A C T G T G C A C G A T A C T G A C G T