Information for 13-CATAAATCAC (Motif 21)

A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G C G T A A C G T A C G T C G A T C G T A A C G T A C T G
p-value:1e-11
log p-value:-2.660e+01
Information Content per bp:1.941
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.3 +/- 30.5bp
Average Position of motif in Background41.7 +/- 33.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa9/MA0594.1/Jaspar

Match Rank:1
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CATAAATCAC
GCCATAAATCA-
 A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-CATAAATCAC
TCATCAATCA-
 A C G T A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:3
Score:0.85
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCAC
GGCCATAAATCAC
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCAC
GGCCATAAATCA-
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.83
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCAC
GGCCATAAATCA-
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:6
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CATAAATCAC
RGCCATYAATCA-
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--CATAAATCAC
GYCATCMATCAT
 A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PB0144.1_Lef1_2/Jaspar

Match Rank:8
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CATAAATCAC---
GAAGATCAATCACTTA
 A C G T A C G T A C G T A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

Gfi1/MA0038.1/Jaspar

Match Rank:9
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CATAAATCAC--
--CAAATCACTG
 A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PBX1/MA0070.1/Jaspar

Match Rank:10
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CATAAATCAC-
CCATCAATCAAA
 A C G T A G T C C G T A A C G T C G T A G T C A C G T A A C G T A G T C C G T A A G T C A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A