Information for 11-RRTGAKGGATGRC (Motif 9)

C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C
Reverse Opposite:
C T A G A G T C A G T C C G T A A C G T A G T C A G T C G T C A A C G T A G T C C G T A A G T C A G C T
p-value:1e-13
log p-value:-3.158e+01
Information Content per bp:1.879
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.0 +/- 19.0bp
Average Position of motif in Background80.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:RRTGAKGGATGRC
-ATGATKGATGRC
 C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.76
Offset:2
Orientation:forward strand
Alignment:RRTGAKGGATGRC-
--TGATTRATGGCY
 C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C A C G T
A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:RRTGAKGGATGRC
--TGATTGATGA-
 C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:RRTGAKGGATGRC
--TGATTTATGGC
 C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----RRTGAKGGATGRC
NNNNNATTGATGNGTGN-
 A C G T A C G T A C G T A C G T A C G T C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A A C G T

PBX1/MA0070.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:RRTGAKGGATGRC
TTTGATTGATGN-
 C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G A C G T

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:7
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:RRTGAKGGATGRC-
--TGATTTATGGCC
 C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:RRTGAKGGATGRC-
--TGATTTATGGCC
 C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C A C G T
A C G T A C G T C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--RRTGAKGGATGRC-
NNANTGATTGATNTTN
 A C G T A C G T C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

Atf3/MA0605.1/Jaspar

Match Rank:10
Score:0.59
Offset:7
Orientation:forward strand
Alignment:RRTGAKGGATGRC--
-------GATGACGT
 C T G A C T A G A C G T A C T G C G T A A C G T A C T G A C T G C G T A A C G T A C T G C T A G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T