Information for 14-GGAARGGGTTAAM (Motif 16)

A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A
Reverse Opposite:
A C G T A C G T A C G T C G T A C G T A A G T C A G T C A G T C A G T C C G A T A C G T A G T C A G T C
p-value:1e-11
log p-value:-2.743e+01
Information Content per bp:1.921
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.0 +/- 21.1bp
Average Position of motif in Background37.3 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0137.1_Pitx1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGAARGGGTTAAM---
TTAGAGGGATTAACAAT
 A C G T A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A A C G T A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGAARGGGTTAAM----
TGAAGGGATTAATCATC
 A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A A C G T A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C

PH0129.1_Otx1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGAARGGGTTAAM----
AGAGGGGATTAATTTAT
 A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A A C G T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:GGAARGGGTTAAM
--AAGGTGTKAA-
 A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A
A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

PH0130.1_Otx2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GGAARGGGTTAAM----
TGTAGGGATTAATTGTC
 A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A A C G T A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PH0125.1_Obox5_2/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GGAARGGGTTAAM----
NANAGGGATTAATTATN
 A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A A C G T A C G T A C G T A C G T
T C G A C T G A T C A G T C G A T C A G T C A G A C T G G C T A A C G T C G A T C G T A C G T A G C A T G A C T T C G A G C A T T G A C

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGAARGGGTTAAM---
GGCGAGGGGTCAAGGGC
 A C G T A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGAARGGGTTAAM---
CTCCAGGGGTCAATTGA
 A C G T A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GGAARGGGTTAAM
---AGGTGTTAAT
 A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A
A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGAARGGGTTAAM----
NNAAGGGATTAACGANT
 A C T G A C T G G T C A C G T A C T A G A C T G A C T G A C T G A C G T A C G T C G T A C G T A G T C A A C G T A C G T A C G T A C G T
A C G T C G T A G T C A C T G A T A C G C T A G C T A G G T C A A C G T A G C T C G T A C T G A A G T C C A T G C G T A A G C T C G A T