Information for 20-CTTYTTRATSACC (Motif 25)

A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C
Reverse Opposite:
A C T G A C T G A C G T A T C G C G T A A C G T A G T C C G T A C G T A C T A G C T G A C G T A A C T G
p-value:1e-8
log p-value:-2.028e+01
Information Content per bp:1.894
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.2 +/- 22.0bp
Average Position of motif in Background71.4 +/- 19.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTTYTTRATSACC---
NNAATTAATGACCNNN
 A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C A C G T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PH0016.1_Cux1_1/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTTYTTRATSACC---
ACCGGTTGATCACCTGA
 A C G T A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C A C G T A C G T A C G T
C T G A A T G C G A T C T C A G T C A G G A C T G C A T C T A G C T G A C G A T G A T C G C T A G T A C T A G C C G A T A T C G C T G A

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CTTYTTRATSACC
--NTTTTATTACN
 A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C
A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

MEOX2/MA0706.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CTTYTTRATSACC
---NTTAATTACN
 A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C
A C G T A C G T A C G T A C T G G C A T G A C T T C G A G T C A C A G T A C G T C T G A A T G C G A C T

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CTTYTTRATSACC
--TTTTTATTGC-
 A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C
A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CTTYTTRATSACC
---TTTAAT----
 A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C
A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CTTYTTRATSACC---
NAATTTTATTACCTNN
 A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C A C G T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

HOXC10/MA0905.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTTYTTRATSACC
--NTTTTACGAC-
 A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C
A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTTYTTRATSACC---
TTTATTAATTGCNNGN
 A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C A C G T A C G T A C G T
G C A T G A C T A C G T C T G A C G A T G C A T C G T A C G T A A C G T C A G T C T A G G A T C G T A C T C A G A T C G C G A T

NKX6-1/MA0674.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CTTYTTRATSACC
----TTAATTAN-
 A G T C A C G T A G C T G A C T A C G T A C G T C T A G C G T A A C G T A T G C C G T A A G T C A G T C
A C G T A C G T A C G T A C G T C G A T A G C T C G T A C G T A C A G T C A G T C T G A A T G C A C G T