Information for 19-TYCCCCAGGCAKK (Motif 27)

A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
Reverse Opposite:
T G A C G T C A C G A T A T C G A T G C A G T C A C G T A C T G A T C G C A T G A T C G C T A G C T G A
p-value:1e-7
log p-value:-1.738e+01
Information Content per bp:1.691
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif77.2
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets54.8 +/- 30.2bp
Average Position of motif in Background55.8 +/- 37.6bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TYCCCCAGGCAKK
TGCCCCCGGGCA--
 A C G T A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TYCCCCAGGCAKK
----BCAGACWA-
 A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:TYCCCCAGGCAKK
----CCAGACAG-
 A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

TFAP2B/MA0811.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TYCCCCAGGCAKK
TGCCCCAGGGCA--
 A C G T A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A A C G T A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:TYCCCCAGGCAKK
AGCCTCAGGCA--
 A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TYCCCCAGGCAKK
CGCCTCAGGCA--
 A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TYCCCCAGGCAKK
NTCCCCTCAGGGANT
 A C G T A C G T A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
G A C T C G A T G A T C A T G C G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A C G C G T A G C T A G C A T

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TYCCCCAGGCAKK
NTCGCCTCAGGCAAT
 A C G T A C G T A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
G C A T C G A T G A T C A T C G G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A G C C T G A C G T A C G A T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TYCCCCAGGCAKK
NTNGCCTCAGGCNNN
 A C G T A C G T A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
G C T A C A G T G A C T A T C G A G T C A G T C A G C T T A G C T C G A T C A G A C T G T A G C C G T A C G T A C G A T

TFAP2C/MA0524.2/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TYCCCCAGGCAKK
TGCCCCAGGGCA--
 A C G T A G C T G A T C A T G C G A T C T A G C G T A C C G T A A C T G T A C G A T G C C G T A C A G T A C T G
G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A A C G T A C G T