Information for 17-GCGCAGCCAATGR (Motif 23)

A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G
Reverse Opposite:
G A C T A T G C C G T A A C G T A C G T A C T G A C T G A G T C A C G T A C T G A T G C A C T G A G T C
p-value:1e-8
log p-value:-2.041e+01
Information Content per bp:1.922
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif7.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets30.2 +/- 13.1bp
Average Position of motif in Background68.0 +/- 15.1bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:forward strand
Alignment:GCGCAGCCAATGR
-ACTAGCCAATCA
 A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.71
Offset:4
Orientation:forward strand
Alignment:GCGCAGCCAATGR-
----AGCCAATCGG
 A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GCGCAGCCAATGR
--BCAGACWA---
 A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G
A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCGCAGCCAATGR
----TGCCAA---
 A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCGCAGCCAATGR-
AAATGGACCAATCAG
 A C G T A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCGCAGCCAATGR---
-CTCACACAATGGCGC
 A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G A C G T A C G T A C G T
A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox17/MA0078.1/Jaspar

Match Rank:7
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCGCAGCCAATGR-
-----GACAATGNN
 A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G A C G T
A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCGCAGCCAATGR
--CGTGCCAAG--
 A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G
A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GCGCAGCCAATGR
TGCCCAGNHW----
 A C G T A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G
C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GCGCAGCCAATGR
---VRAACAATGG
 A C T G A G T C A T C G A G T C C G T A A C T G G T A C A G T C C G T A T C G A A C G T A T C G C T A G
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G