Information for 10-GSASACAWATMMMTRC (Motif 13)

A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C
Reverse Opposite:
A C T G G A T C C G T A A C T G C A G T A C T G C G T A A C G T C G A T A C G T A C T G A C G T A T G C A C G T A T C G A T G C
p-value:1e-11
log p-value:-2.598e+01
Information Content per bp:1.816
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif0.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.0 +/- 32.8bp
Average Position of motif in Background38.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GSASACAWATMMMTRC
CGAAGCACACAAAATA----
 A C G T A C G T A C G T A C G T A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GSASACAWATMMMTRC
AAACAGACAAAGGAAT--
 A C G T A C G T A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T A C G T A C G T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.56
Offset:6
Orientation:forward strand
Alignment:GSASACAWATMMMTRC
------AAATCACTGC
 A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GSASACAWATMMMTRC
-YATGCATATRCATRT
 A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C
A C G T G A T C C G T A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T

Gfi1/MA0038.1/Jaspar

Match Rank:5
Score:0.54
Offset:5
Orientation:forward strand
Alignment:GSASACAWATMMMTRC
-----CAAATCACTG-
 A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C
A C G T A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GSASACAWATMMMTRC-
------AAATCACAGCA
 A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GSASACAWATMMMTRC
BCAGACWA--------
 A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ONECUT1/MA0679.1/Jaspar

Match Rank:8
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GSASACAWATMMMTRC-
---AAAAAATCGATAAT
 A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C A C G T
A C G T A C G T A C G T T G C A C T G A C G T A G C T A C T G A C T G A A C G T A G T C C T A G C G T A G A C T C G T A G C T A G A C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GSASACAWATMMMTRC
CCAGACAG--------
 A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0016.1_Foxj1_1/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GSASACAWATMMMTRC
AAAGTAAACAAAAATT---
 A C G T A C G T A C G T A T C G A T G C C G T A T A C G C G T A A G T C C G T A C G T A C G T A A C G T G T A C G T A C G T A C A C G T C T A G A G T C
G C T A C G A T G C T A C T A G G A C T G T C A G C T A C G T A G A T C C G T A G T C A C G T A G T C A C G T A C A G T C A G T A C G T A C G T A C G T