Information for 1-VCCYCCTGCTGDGHNN (Motif 1)

T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
Reverse Opposite:
G T C A T C A G C A G T A T G C G C T A A G T C G C T A A C T G A T G C C T G A A C T G A C T G C T G A C T A G C A T G A G T C
p-value:1e-184
log p-value:-4.254e+02
Information Content per bp:1.589
Number of Target Sequences with motif248.0
Percentage of Target Sequences with motif28.67%
Number of Background Sequences with motif1137.9
Percentage of Background Sequences with motif2.40%
Average Position of motif in Targets51.2 +/- 21.7bp
Average Position of motif in Background48.8 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.98
Offset:-1
Orientation:forward strand
Alignment:-VCCYCCTGCTGDGHNN
GGCCYCCTGCTGDGH--
 A C G T T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.97
Offset:1
Orientation:reverse strand
Alignment:VCCYCCTGCTGDGHNN
-CCCCCTGCTGTG---
 T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:VCCYCCTGCTGDGHNN
-TCNCCTGCTGNGNNN
 T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:VCCYCCTGCTGDGHNN
-TNTCCTGCTGTGNNG
 T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.93
Offset:4
Orientation:forward strand
Alignment:VCCYCCTGCTGDGHNN
----CCTGCTGAGH--
 T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:VCCYCCTGCTGDGHNN
-NNTCCTGCTGTGNNN
 T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
A C G T G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-VCCYCCTGCTGDGHNN
GACCCCCCGCTGTG---
 A C G T T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:8
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-VCCYCCTGCTGDGHNN
GACCCCCCGCTGCGC--
 A C G T T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.81
Offset:-1
Orientation:forward strand
Alignment:-VCCYCCTGCTGDGHNN
GACCCCCCGCTGTGC--
 A C G T T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:VCCYCCTGCTGDGHNN
----CCAGCTGTTN--
 T C A G G A T C G A T C G A C T A G T C G T A C G A C T A T C G A G T C C G A T A C T G C G A T A T C G G T C A A G T C C A G T
A C G T A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T