Information for 1-TTGWTATGCAAAT (Motif 1)

A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T
Reverse Opposite:
G C T A A C G T A G C T C G A T T C A G G T A C G C T A C G A T C T G A G C A T A G T C G T C A C T G A
p-value:1e-78
log p-value:-1.799e+02
Information Content per bp:1.629
Number of Target Sequences with motif115.0
Percentage of Target Sequences with motif15.42%
Number of Background Sequences with motif690.9
Percentage of Background Sequences with motif1.43%
Average Position of motif in Targets49.5 +/- 24.7bp
Average Position of motif in Background48.5 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--TTGWTATGCAAAT
CATTGTTATGCAAAT
 A C G T A C G T A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T
G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:2
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--TTGWTATGCAAAT
CTTTGTTATGCAAAT
 A C G T A C G T A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T
A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:TTGWTATGCAAAT
---TTATGCAAAT
 A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T
A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.82
Offset:3
Orientation:reverse strand
Alignment:TTGWTATGCAAAT---
---ATATGCAAATNNN
 A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

POU5F1B/MA0792.1/Jaspar

Match Rank:5
Score:0.82
Offset:4
Orientation:forward strand
Alignment:TTGWTATGCAAAT
----TATGCAAAT
 A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T
A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.81
Offset:4
Orientation:forward strand
Alignment:TTGWTATGCAAAT---
----TATGCWAATBAV
 A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU3F1/MA0786.1/Jaspar

Match Rank:7
Score:0.81
Offset:3
Orientation:forward strand
Alignment:TTGWTATGCAAAT--
---TTATGCAAATTA
 A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TTGWTATGCAAAT----
-TTGTATGCAAATTAGA
 A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TTGWTATGCAAAT----
-TTGTATGCAAATTAGA
 A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.81
Offset:3
Orientation:forward strand
Alignment:TTGWTATGCAAAT
---ATATGCAAAT
 A G C T A C G T T A C G C G T A G A C T G C T A C G A T A C T G A G T C G C T A T C G A C G T A C G A T
A C G T A C G T A C G T G T C A G C A T G C T A C A G T C T A G G A T C C G T A C T G A C G T A C G A T