Information for 4-ATTAGCATGT (Motif 2)

C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T
Reverse Opposite:
C G T A T A G C G C T A A C G T C T A G T A G C G C A T T C G A G C T A G A C T
p-value:1e-30
log p-value:-7.102e+01
Information Content per bp:1.667
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif10.58%
Number of Background Sequences with motif874.1
Percentage of Background Sequences with motif1.84%
Average Position of motif in Targets46.3 +/- 27.2bp
Average Position of motif in Background48.6 +/- 31.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---ATTAGCATGT
BTVATTWGCATA-
 A C G T A C G T A C G T C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---ATTAGCATGT
CTCATTTGCATW-
 A C G T A C G T A C G T C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T
A G T C G C A T T G A C G T C A A C G T A G C T C G A T T C A G T G A C G C T A G C A T C G T A A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:3
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--ATTAGCATGT
TAATTTGCATAA
 A C G T A C G T C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--ATTAGCATGT
TAATTTGCATAA
 A C G T A C G T C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

POU3F4/MA0789.1/Jaspar

Match Rank:5
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:ATTAGCATGT
ATTTGCATA-
 C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T
G C T A G C A T C G A T G C A T T C A G G T A C C G T A G A C T C G T A A C G T

POU3F3/MA0788.1/Jaspar

Match Rank:6
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--ATTAGCATGT-
AAATTAGCATAAT
 A C G T A C G T C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T A C G T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-ATTAGCATGT-
AATTTGCATANT
 A C G T C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T A C G T
G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.76
Offset:0
Orientation:forward strand
Alignment:ATTAGCATGT
ATTTGCATAA
 C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T
C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

POU5F1B/MA0792.1/Jaspar

Match Rank:9
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:ATTAGCATGT
ATTTGCATA-
 C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T
G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---ATTAGCATGT
TTCATTTGCATAT
 A C G T A C G T A C G T C T G A C G A T A G C T C G T A A T C G G A T C T G C A C G A T A T C G G C A T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T