Information for 1-KYCWTTGTYATGCAAA (Motif 1)

A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A
Reverse Opposite:
A G C T A G C T G C A T T C A G G T A C C G T A C G A T C T G A C G T A A T G C C G T A C G T A G C A T C T A G T C A G T G C A
p-value:1e-293
log p-value:-6.748e+02
Information Content per bp:1.628
Number of Target Sequences with motif221.0
Percentage of Target Sequences with motif32.94%
Number of Background Sequences with motif337.3
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets52.1 +/- 19.5bp
Average Position of motif in Background51.4 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pou5f1::Sox2/MA0142.1/Jaspar

Match Rank:1
Score:0.96
Offset:2
Orientation:forward strand
Alignment:KYCWTTGTYATGCAAA-
--CTTTGTTATGCAAAT
 A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A A C G T
A C G T A C G T A G T C G C A T A G C T C A G T T A C G C G A T G A C T G C T A C G A T A C T G A G T C C G T A C T G A C T G A C A G T

OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.94
Offset:2
Orientation:reverse strand
Alignment:KYCWTTGTYATGCAAA-
--CATTGTTATGCAAAT
 A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A A C G T
A C G T A C G T G A T C G C T A G A C T C G A T A T C G C G A T G A C T C G T A C G A T C A T G A G T C C G T A C T G A C G T A C G A T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.71
Offset:7
Orientation:reverse strand
Alignment:KYCWTTGTYATGCAAA-
-------TTATGCAAAT
 A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T

POU3F1/MA0786.1/Jaspar

Match Rank:4
Score:0.70
Offset:7
Orientation:forward strand
Alignment:KYCWTTGTYATGCAAA---
-------TTATGCAAATTA
 A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.70
Offset:8
Orientation:forward strand
Alignment:KYCWTTGTYATGCAAA----
--------TATGCWAATBAV
 A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

POU5F1B/MA0792.1/Jaspar

Match Rank:6
Score:0.69
Offset:8
Orientation:forward strand
Alignment:KYCWTTGTYATGCAAA-
--------TATGCAAAT
 A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.69
Offset:6
Orientation:forward strand
Alignment:KYCWTTGTYATGCAAA--
------AATATGCAAATT
 A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A G A C T C G T A A G C T C A T G A G T C C G T A C T G A C G T A C G A T C A G T

POU2F2/MA0507.1/Jaspar

Match Rank:8
Score:0.68
Offset:7
Orientation:reverse strand
Alignment:KYCWTTGTYATGCAAA----
-------ATATGCAAATNNN
 A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A

Pou2f3/MA0627.1/Jaspar

Match Rank:9
Score:0.68
Offset:5
Orientation:forward strand
Alignment:KYCWTTGTYATGCAAA-----
-----TTGTATGCAAATTAGA
 A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:10
Score:0.68
Offset:5
Orientation:forward strand
Alignment:KYCWTTGTYATGCAAA-----
-----TTGTATGCAAATTAGA
 A C G T A G T C G A T C C G T A A C G T C G A T T A C G C G A T G A C T G C T A A C G T A C T G A G T C C G T A C T G A T C G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A