Information for 5-CAATTARCAC (Motif 4)

G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
Reverse Opposite:
T C A G G C A T A T C G G A C T C G A T C T G A C G T A A G C T C A G T C T A G
p-value:1e-30
log p-value:-6.948e+01
Information Content per bp:1.618
Number of Target Sequences with motif158.0
Percentage of Target Sequences with motif21.53%
Number of Background Sequences with motif807.9
Percentage of Background Sequences with motif7.88%
Average Position of motif in Targets51.0 +/- 25.6bp
Average Position of motif in Background48.3 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EN2/MA0642.1/Jaspar

Match Rank:1
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CAATTARCAC
CCCAATTAGC--
 A C G T A C G T G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T A C G T

ESX1/MA0644.1/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CAATTARCAC
ACCAATTAAC--
 A C G T A C G T G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
T C G A G A T C G A T C T C G A G T C A G A C T G A C T G C T A T C G A G T A C A C G T A C G T

HESX1/MA0894.1/Jaspar

Match Rank:3
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--CAATTARCAC
NCCAATTANC--
 A C G T A C G T G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
C T A G A G T C G A T C C T G A G T C A A G C T G A C T G C T A C T A G A G T C A C G T A C G T

LBX2/MA0699.1/Jaspar

Match Rank:4
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--CAATTARCAC
GCCAATTAGC--
 A C G T A C G T G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
T C A G A G T C G A T C T G C A T G C A A C G T A C G T C G T A C T A G T A G C A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:5
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--CAATTARCAC
NNCAATTANN--
 A C G T A C G T G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T

GBX2/MA0890.1/Jaspar

Match Rank:6
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CAATTARCAC
ACCAATTAGC--
 A C G T A C G T G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
T C G A A T G C G A T C T C G A T G C A A C G T A C G T G C T A T C A G A T G C A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:7
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CAATTARCAC
ACTAATTAGC--
 A C G T A C G T G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
C T G A T A G C G A C T T G C A T C G A A G C T G A C T G C T A T C A G T G A C A C G T A C G T

MIXL1/MA0662.1/Jaspar

Match Rank:8
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CAATTARCAC
TCTAATTAAC--
 A C G T A C G T G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
C G A T A G T C G A C T T C G A G C T A A G C T A G C T G C T A T C G A T G A C A C G T A C G T

HOXA2/MA0900.1/Jaspar

Match Rank:9
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CAATTARCAC
CCTAATTACC--
 A C G T A C G T G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
T A G C T A G C G A C T T G C A T C G A A C G T G A C T G C T A T A G C T A G C A C G T A C G T

LHX9/MA0701.1/Jaspar

Match Rank:10
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-CAATTARCAC
CCAATTAA---
 A C G T G A T C G T C A T C G A A C G T A G C T C G T A C T G A T A G C C G T A A G T C
A G T C G A T C G T C A C G T A A C G T A C G T C T G A T C G A A C G T A C G T A C G T