Information for 15-RGAGCTCATT (Motif 18)

T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T
Reverse Opposite:
T C G A T G C A A C G T A C T G C T G A C T A G A G T C A G C T T A G C A G T C
p-value:1e-10
log p-value:-2.331e+01
Information Content per bp:1.762
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif52.6
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets55.5 +/- 32.5bp
Average Position of motif in Background48.6 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.78
Offset:2
Orientation:forward strand
Alignment:RGAGCTCATT--
--AGCTCATTAT
 T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T A C G T A C G T
A C G T A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-RGAGCTCATT------
NNNACCTCATTATCNTN
 A C G T T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

PH0152.1_Pou6f1_2/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-RGAGCTCATT------
GCAACCTCATTATNNNN
 A C G T T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:RGAGCTCATT
AGRGGTCA--
 T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:RGAGCTCATT
TRAGGTCA--
 T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

PB0099.1_Zfp691_1/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----RGAGCTCATT--
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A C G T T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

PH0058.1_Hoxb3/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:RGAGCTCATT-------
TGAGCTAATTAGTTGGA
 T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:RGAGCTCATT
--AGGTCA--
 T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:9
Score:0.61
Offset:5
Orientation:forward strand
Alignment:RGAGCTCATT---
-----TCAGTCTT
 T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

NOTO/MA0710.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:RGAGCTCATT---
---GCTAATTAGC
 T C A G A T C G C T G A C T A G A G T C A G C T A G T C G T C A A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A C G T T A C G G A T C G C A T G T C A C G T A A C G T C A G T C T G A T C A G A T G C