Information for 7-CTCATTGTTCTCT (Motif 6)

A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T
Reverse Opposite:
C T G A C T A G C T G A A C T G C T G A C G T A A G T C C G T A T C G A C G A T T A C G C T G A T A C G
p-value:1e-16
log p-value:-3.734e+01
Information Content per bp:1.752
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.72%
Number of Background Sequences with motif81.3
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets42.5 +/- 24.9bp
Average Position of motif in Background39.1 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CTCATTGTTCTCT--
-TAATTGTTCTAAAC
 A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T A C G T A C G T
A C G T G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CTCATTGTTCTCT-
NNTTTATTGTTCTNNN
 A C G T A C G T A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0070.1_Sox30_1/Jaspar

Match Rank:3
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---CTCATTGTTCTCT
ANNTCCATTGTTCNNN
 A C G T A C G T A C G T A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T
C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CTCATTGTTCTCT--
CNNNTATTGTTCNNNNN
 A C G T A C G T A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

PB0065.1_Sox15_1/Jaspar

Match Rank:5
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CTCATTGTTCTCT-
ANNTCTATTGTTCNNNA
 A C G T A C G T A C G T A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CTCATTGTTCTCT
-CCATTGTTTT--
 A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T
A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CTCATTGTTCTCT
NCCATTGTTC---
 A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CTCATTGTTCTCT--
TTCAATTGTTCTAAAA
 A C G T A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T A C G T A C G T
A G C T G C A T A G T C G T C A C G T A C G A T C G A T T C A G C G A T G C A T A G T C G C A T G T C A C G T A G T C A G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CTCATTGTTCTCT
-CCATTGTTYB--
 A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T
A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--CTCATTGTTCTCT-
AANTTATTGTTCTNNA
 A C G T A C G T A T G C G A C T A T G C C G T A A G C T A C G T T A C G G A C T A G C T A G T C A G C T A G T C G A C T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A